RNAseg
RNAseg is a tool for the identification of transcriptional units based on dRNA-seq data.
Download RNAseg sources here and the examples to reproduce the results from the publication here.
If you want to reproduce the results from the publication you need Perl and Python installed. Please extract the downloaded examples into the RNAseg folder, such that the included script "run_test_data.sh" will find the scripts in the helper subfolder of RNAseg. Your directory should look like this:
-rw-r--r-- 1 bvoss staff 14877 27 Nov 2012 COPYRIGHT -rw-r--r-- 1 bvoss staff 101 1 Okt 15:57 Makefile.am -rw-r--r-- 1 bvoss staff 23749 1 Okt 15:58 Makefile.in -rw-r--r-- 1 bvoss staff 2841 6 Mai 11:41 README -rw-r--r-- 1 bvoss staff 57219 1 Okt 15:29 aclocal.m4 -rwxr-xr-x 1 bvoss staff 7333 26 Jun 21:13 compile -rwxr-xr-x 1 bvoss staff 201069 1 Okt 15:29 configure -rw-r--r-- 1 bvoss staff 813 1 Okt 15:26 configure.ac -rwxr-xr-x 1 bvoss staff 23491 28 Feb 2013 depcomp drwxr-xr-x 5 bvoss staff 170B 1 Okt 15:49 example drwxr-xr-x 5 bvoss staff 170 1 Okt 16:08 helper -rwxr-xr-x 1 bvoss staff 13997 28 Feb 2013 install-sh -rwxr-xr-x 1 bvoss staff 6873 28 Feb 2013 missing drwxr-xr-x 9 bvoss staff 306 1 Okt 16:08 src
Much fun!