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RNAseg

RNAseg is a tool for the identification of transcriptional units based on dRNA-seq data.

Download RNAseg sources here and the examples to reproduce the results from the publication here.

If you want to reproduce the results from the publication you need Perl and Python installed. Please extract the downloaded examples into the RNAseg folder, such that the included script "run_test_data.sh" will find the scripts in the helper subfolder of RNAseg. Your directory should look like this:

-rw-r--r--  1 bvoss  staff   14877 27 Nov  2012 COPYRIGHT
-rw-r--r--  1 bvoss  staff     101  1 Okt 15:57 Makefile.am
-rw-r--r--  1 bvoss  staff   23749  1 Okt 15:58 Makefile.in
-rw-r--r--  1 bvoss  staff    2841  6 Mai 11:41 README
-rw-r--r--  1 bvoss  staff   57219  1 Okt 15:29 aclocal.m4
-rwxr-xr-x  1 bvoss  staff    7333 26 Jun 21:13 compile
-rwxr-xr-x  1 bvoss  staff  201069  1 Okt 15:29 configure
-rw-r--r--  1 bvoss  staff     813  1 Okt 15:26 configure.ac
-rwxr-xr-x  1 bvoss  staff   23491 28 Feb  2013 depcomp
drwxr-xr-x  5 bvoss  staff    170B  1 Okt 15:49 example
drwxr-xr-x  5 bvoss  staff     170  1 Okt 16:08 helper
-rwxr-xr-x  1 bvoss  staff   13997 28 Feb  2013 install-sh
-rwxr-xr-x  1 bvoss  staff    6873 28 Feb  2013 missing
drwxr-xr-x  9 bvoss  staff     306  1 Okt 16:08 src

Much fun!

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